I know this is an old thread, but I just picked up a 2015 R3 and am worried about a similar issue.
I bought the bike with 530km on it (330 miles) and have rode it about 200km (120ish miles?). Yesterday while coasting it a light I put it in neutral and let the clutch out and could have sworn I felt a slight knock. Then while at the light in neutral I continue to feel it. Its not loud or even that intense, but it's definitely enough that I notice it. I think it's only when warmed up, though I'll have to check again.
The dealer I bought it from was super unco-operative about recall information, but I confirmed with another Yamaha dealer that my bike had the oil recall and that work had been done, but everyone I spoke to seemed to have no knowledge of any clutch bearing recall and nothing came up when the dealer searched by the VIN.
So I guess my question is, is this just the normal noise everyone else is hearing and calling normal? Or is this clunky noise feeling the clutch bearing failing and should I get ready to replace it? I could very well be overreacting, but I've never owned such a new vehicle, nor have I done a lot of bike maintenance (lots of car experience though) so should I be concerned? Thanks!