I’m with you. Most of the aftermarket doesn’t wind up looking anywhere near as integrated as the stock one. Personally I think they all sound about the same until you ditch the cat and open a new can of expensive worms. Some louder or deeper versions of the same lawnmower. I watched a video of some guy laboriously running a 1” hole saw on an extension to gain a straight shot thru a stock can. End result was a near nothing change in tone with the new addition of some pops and bangs. No thanks. As far as building a Flowmaster for an R3...might work, but my guess is a similar outcome for a lotta effort. I really considered trying exactly what you outlined, think once you start looking at how overbuilt that thing is you’ll realize, (as I did), that it is gonna be one serious nut to crack.
My 2 cents worth of advice, Paint It. Throw any other HighTemp color on it than black and it’ll look so good you won’t care what it sounds like.
wedgeSG